[Biojava-l] Biojava-l Digest, Vol 93, Issue 9

[Richard Holland]

There is no such thing as a Biojava journal. You would need to submit your paper to one of the main bioinformatics journals.

cheers,
Richard

On 21 Oct 2010, at 15:30, sobia idrees wrote:

> Hi
> 
> I have developed some web based and desktop based applications using
> biojava..Can it be published in Biojava journal?
> 
> Thanks,
> Sobia Idrees
> 
> On Thu, Oct 21, 2010 at 7:28 PM, sobia idrees <sb.genny at gmail.com> wrote:
> 
>> Hi
>> 
>> I want to develop phylogenetics application in biojava..but need help to do
>> that..Kindly help me in developing some applications..
>> 
>> Thanks in anticipation
>> 
>> Regards,
>> Sobia Idrees
>> 
>> 
>> On Tue, Oct 19, 2010 at 9:00 PM, <biojava-l-request at lists.open-bio.org>wrote:
>> 
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>>> When replying, please edit your Subject line so it is more specific
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>>> 
>>> Today's Topics:
>>> 
>>>  1. feature request - full query description from blast       result
>>>     (Hedwig Kurka)
>>> 
>>> 
>>> ----------------------------------------------------------------------
>>> 
>>> Message: 1
>>> Date: Tue, 19 Oct 2010 13:25:31 +0200
>>> From: Hedwig Kurka <kurka at mikro.biologie.tu-muenchen.de>
>>> Subject: [Biojava-l] feature request - full query description from
>>>       blast   result
>>> To: biojava-l at lists.open-bio.org
>>> Message-ID: <4CBD802B.7030809 at mikro.biologie.tu-muenchen.de>
>>> Content-Type: text/plain; charset=ISO-8859-15
>>> 
>>> Hi all,
>>> 
>>> I just read in a blast file and I want to get the full query description.
>>> For example, when I have that query:
>>> Query= ||/locus_tag= CD0002 ||/gene=dnaN ||/product= DNA polymerase
>>> III subunit beta ||/protein_id= YP_001086465.1 ||/transl_table=11
>>> ||/db_xref=||/organism=Clostridium difficile 630 |feature_id=2
>>>        (1208 letters)
>>> 
>>> I get as query-information locus_tag= CD0002
>>> The rest is truncated.
>>> 
>>> In the biojava-mailinglist I found the same question
>>> http://www.mail-archive.com/biojava-l@lists.open-bio.org/msg01022.html
>>> 
>>> And Mark suggested to make a request for improvement, but as I see it,
>>> nothing happened. So I would like to ask, if you can change it. Or is it
>>> changed and I don't see it.
>>> 
>>> Thanks,
>>> Hedwig
>>> 
>>> 
>>> ------------------------------
>>> 
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>>> 
>>> 
>>> End of Biojava-l Digest, Vol 93, Issue 9
>>> ****************************************
>>> 
>> 
>> 
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--
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/