[Biojava-l] Biojava-l Digest, Vol 93, Issue 9

[sobia idrees]

Hi

I want to develop phylogenetics application in biojava..but need help to do
that..Kindly help me in developing some applications..

Thanks in anticipation

Regards,
Sobia Idrees


On Tue, Oct 19, 2010 at 9:00 PM, <biojava-l-request at lists.open-bio.org>wrote:

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> Today's Topics:
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>   1. feature request - full query description from blast       result
>      (Hedwig Kurka)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 19 Oct 2010 13:25:31 +0200
> From: Hedwig Kurka <kurka at mikro.biologie.tu-muenchen.de>
> Subject: [Biojava-l] feature request - full query description from
>        blast   result
> To: biojava-l at lists.open-bio.org
> Message-ID: <4CBD802B.7030809 at mikro.biologie.tu-muenchen.de>
> Content-Type: text/plain; charset=ISO-8859-15
>
> Hi all,
>
> I just read in a blast file and I want to get the full query description.
> For example, when I have that query:
> Query= ||/locus_tag= CD0002 ||/gene=dnaN ||/product= DNA polymerase
> III subunit beta ||/protein_id= YP_001086465.1 ||/transl_table=11
> ||/db_xref=||/organism=Clostridium difficile 630 |feature_id=2
>         (1208 letters)
>
> I get as query-information locus_tag= CD0002
> The rest is truncated.
>
> In the biojava-mailinglist I found the same question
> http://www.mail-archive.com/biojava-l@lists.open-bio.org/msg01022.html
>
> And Mark suggested to make a request for improvement, but as I see it,
> nothing happened. So I would like to ask, if you can change it. Or is it
> changed and I don't see it.
>
> Thanks,
> Hedwig
>
>
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> End of Biojava-l Digest, Vol 93, Issue 9
> ****************************************
>