[Biojava-l] sort fasta file

[Richard Holland]

Andy and I came to the conclusion yesterday that this is probably a bug with Java itself - somewhere in the readLine() method in BufferedReader. There's nothing in BioJava that could cause this kind of behaviour other than if it was being fed duff information by BufferedReader.

On 27 Mar 2010, at 00:03, xyz wrote:

> Please find the input fasta file attached. This file I created under
> Linux and I also work with BioJava under Linux. Nothing change if I
> created after the last sequence a new line.
> 
> On Fri, 26 Mar 2010 11:04:22 +0000
> Richard Holland wrote:
> 
>> I can't see anything in the code that would cause that
>> behaviour. :( Could you provide sample code and a supporting FASTA
>> file that replicates the problem?
>> 
> 
> <sortFasta.fasta>

--
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/