[Biojava-l] Reading and writting Fastq files

[xyz]

Hello,
I would like to use org.biojava.bio.program.fastq in order to read and
write Illumina fastq files.

Are there any BioJava examples how to work with fastq files?

On Sat, 27 Mar 2010 17:40:21 +0530
jitesh dundas wrote:

> Hello,
> 
> Fasta files are  normal text files. Try parsing using normal text
> parsing methods.
> 
> If you could be more specific & tell me the format details,then I
> could help better.
> 
> btw,try using biojava ,the easy & better option if you want.
> 
> Regards,
> Jitesh Dundas
> 
> On 3/27/10, xyz <mitlox at op.pl> wrote:
> > Hello,
> > I could not find any examples how to read or write fastq files.
> >
> > import java.io.BufferedReader;
> > import java.io.FileNotFoundException;
> > import java.io.FileReader;
> > import org.biojava.bio.program.fastq.FastqReader;
> >
> > public class Fastq2Fasta {
> >   public static void main(String[] args) throws
> > FileNotFoundException  { BufferedReader br = new BufferedReader(new
> > FileReader("fastq2fasta.fasta"));
> >   }
> > }
> >
> > Are there any examples how to work with fastq files?
> >
> > Thank you in advance.
> >
> > Best regards,
> > _______________________________________________
> > Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/biojava-l
> >