[Biojava-l] Reading and writting Fastq files

xyz mitlox at op.pl
Sat Mar 27 01:49:46 UTC 2010


Hello,
I could not find any examples how to read or write fastq files. 

import java.io.BufferedReader;
import java.io.FileNotFoundException;
import java.io.FileReader;
import org.biojava.bio.program.fastq.FastqReader;

public class Fastq2Fasta {
  public static void main(String[] args) throws FileNotFoundException  {
    BufferedReader br = new BufferedReader(new FileReader("fastq2fasta.fasta"));
  }
}

Are there any examples how to work with fastq files?

Thank you in advance.

Best regards,



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