[Biojava-l] Question about All-Java Multiple Sequence Alignment project of Google Summer of Code

[Mark Chapman]

Hi Yiwei (and list members),

I am also a graduate student in Bioinformatics interested in the Google Summer 
of Code project.  The authors' current implementations of ClustalW and ClustalX 
are written in C++.  Binaries, code, and references are located at 
http://www.clustal.org/ .  Download the boldfaced references (Larkin et al 2007 
and Thompson et al 1994) for the most relevant information.

Take care,
Mark


On 3/25/2010 3:14 PM, Yiwei Zhang wrote:
> Hi,
>
> I am a graduate student of computer science and my field of study is related
> to Bioinformatic algorithms. I am proficient at  JAVA programming. I feel
> very interested in this project because currently I am working on sequence
> alignment and phylogeny tree reconstruction.
>
> My question is that, if the project requires implementing the existing
> alignment algorithms of current tools, what is the
> original implementation language of the tools? C++ or C or something else?
>
> Thanks!
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