[Biojava-l] Parsing out identities from a blast file

[Ben Temperton]

Hi there,
 
Does anyone know what methods I need to invoke to pull out the identity
for a particular hit when parsing a blast output?
 
I can get the score, the start & end points etc using:
SeqSimilaritySearchHit hit = (SeqSimilaritySearchHit)obj;
                LOGGER.debug("match:" + hit.getSubjectID() + ", score:"
+ hit.getScore() + ", e-value:" + hit.getEValue());
 
But I can't seem to find any method to pull out the identity of the hit,
which I would have thought would be in the SeqSimilaritySearchSubHit
interface.
 
Many thanks,
 
Ben
 

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