[Biojava-l] PDB parsing: Calculate absolute atom numbers of a chain.
andreas.prlic at gmail.com
Wed Mar 4 15:38:26 UTC 2009
You will need to use the getPDBCode() method to obtain the PDB residue
number as well as the chain ID to select the residue in Jmol.
2009/3/4 Ashika Umanga Umagiliya <aumanga at biggjapan.com>:
> Greetings all,
> From a database; I retrieve PDB-id ,chainID and epitope positions.These
> epitope positions are calculated relative to its Chain.
> I want to select these epitope positions (residues) in JMol.But in jmol the
> select query support only absolute residues numbers.
> CHAIN L : residues 10,12,13,15 (relative to chain L)
> But in PDB file (in JMOL) the values are 210,212,213,215 - this are what I
> want to calculate?
> Anyway to calculate this?
> Thanks in advance,
> $B%"%7%+(B $B%&%^%s%,(B $B%&%^%.%j%d(B
> $BEl5~ETIJ at n6hKLIJ@n(B3-6-9 $B%"%s%I%&%S%k(B8F
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