[Biojava-l] [Off the Topic] Homology prediction of large number of sequences!

[Ashika Umanga Umagiliya]

Greetings all,

I have about 60,000  sequences and want to predict the 3D structure 
(Homology modelling) for all the structures.I decided to use Modeller 
first , and seems that would take months to predict all those structures.
Is there any HighPerformance prediction server which I have use for 
this? Not submitting data through webbased interface , I want to 
automate the process , cuz 60K is alot of data!

Thanks in advance,
umanga