[Biojava-l] [Off the Topic] Homology prediction of large number of sequences!

[Mark Schreiber]

I don't know about high performance but the problem is very parallel
so if you can get your hands on a cluster you can run one sequence on
each processor.

Maybe there is a cloud compute facility you could use if a cluster is
not available.

You might also want to try a pilot experiment first. There is bound to
be some redundancy in some of those proteins which will give nearly
identical models.

- Mark

On Thu, Feb 5, 2009 at 1:57 PM, Ashika Umanga Umagiliya
<aumanga at biggjapan.com> wrote:
>
> Greetings all,
>
> I have about 60,000  sequences and want to predict the 3D structure (Homology modelling) for all the structures.I decided to use Modeller first , and seems that would take months to predict all those structures.
> Is there any HighPerformance prediction server which I have use for this? Not submitting data through webbased interface , I want to automate the process , cuz 60K is alot of data!
>
> Thanks in advance,
> umanga
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