[Biojava-l] construction of profile HMM from Multiple sequence alignment

[Aulia Rahma Amin]

Hello,

I cannot find a method in biojava to construct a profile HMM correctly
from a multiple sequence alignment. So I construct a method to do it using
my self made heuristic. I dont know if my heuristics is correct enough
because I haven't read "Biological sequence analysis" book yet.

--
Aulia Rahma Amin
Informatics
Bandung Institute of Technology
Indonesia

> Hallo,
>
> Please, excuse me for possible mistakes because i'm relatively new here.
>
> My Question is: Is there any way in Biojava to construct a profile HMM
> from a multiple sequence alignment? Are algorithms implemented like it is
> described in the "Biological sequence analysis" book?
>
>
> Thank you for possible answers.
> _____________________________________________________________________