[Biojava-l] construction of profile HMM from Multiple sequence alignment

[Daniel Rohrbach]

Hallo,

Please, excuse me for possible mistakes because i'm relatively new here.

My Question is: Is there any way in Biojava to construct a profile HMM from a multiple sequence alignment? Are algorithms implemented like it is described in the "Biological sequence analysis" book? 

	
Thank you for possible answers.
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