[Biojava-l] SCF file wont load from URL

[mark.schreiber at novartis.com]

Hi -

This sounds very strange. Is there any stack trace? Could you possibly 
post the code that recreates the problem?

- Mark





"K.R. Carter" <k_stellar at msn.com>
Sent by: biojava-l-bounces at lists.open-bio.org
08/31/2006 04:34 AM
Please respond to kikia.reneese

 
        To:     biojava-l at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-l] SCF file wont load from URL


Hello,

I am trying to load an scf file by using the input stream from a url and 
it
will not load. Does anyone know what might be happening? My program doesnt
give an error, it just completely freezes.  I am using the latest ( i 
think)
version of SCF class.


/**
 * A {@link org.biojava.bio.chromatogram.Chromatogram} as loaded from an
 * SCF v2 or v3 file.  Also loads and exposes the SCF format's "private
data"
 * and "comments" sections.  The quality values from the SCF are stored as
 * additional sequences on the base call alignment. The labels are the
 * <code>PROB_</code>* constants in this class.
 * The values are {@link
org.biojava.bio.symbol.IntegerAlphabet.IntegerSymbol}
 * objects in the range 0 to 255.
 *
 *
 * @author Rhett Sutphin (<a href="http://genome.uiowa.edu/">UI CBCB</a>)
 */

any help would be greatly appreciated.

Thanks!
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