[Biojava-l] Graph library

[mark.schreiber at novartis.com]

Looks interesting. What is the relationship between cytoscape and GINY?

- Mark





Gary Bader <bader at cbio.mskcc.org>
10/03/2005 02:23 PM

 
        To:     Mark Schreiber/GP/Novartis at PH
        cc:     biojava-l at biojava.org
        Subject:        Re: [Biojava-l] Graph library


Hi Mark,
                 My favorite is Cytoscape (www.cytoscape.org), which 
includes a graph 
library (full disclosure - I'm involved in the project). It is LGPL. 
You can also look at JUNG (http://jung.sourceforge.net/). It is BSD. 
Cytoscape is better suited to biological problems than JUNG and I use it 
with Biojava on a regular basis.

Gary

mark.schreiber at novartis.com wrote:
> Hello -
> 
> Does anyone know of a good java graph library that is LGPL, Apache 
license 
> or similar? Not data graphing but graph as in the mathematical 
construct.
> 
> - Mark
> 
> Mark Schreiber
> Principal Scientist (Bioinformatics)
> 
> Novartis Institute for Tropical Diseases (NITD)
> 10 Biopolis Road
> #05-01 Chromos
> Singapore 138670
> www.nitd.novartis.com
> 
> phone +65 6722 2973
> fax  +65 6722 2910
> 
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