[Biojava-l] Graph library

[Gary Bader]

Hi Mark,
	GINY is the open source graph library underlying Cytoscape - it is a 
separate project on sourceforge for modularity reasons at 
http://csbi.sourceforge.net/

This has recently been reimplemented and named FING in the context of 
Cytoscape.  I'm not sure if the GINY sourceforge site is completely up 
to date with the current Cytoscape - so if you're just interested in the 
graph library by itself, it would be good to send a message to the 
cytoscape-discuss at googlegroups.com mailing list asking about it and I 
can get the main developer to let you know if the sourceforge package is 
up to date.

Gary

mark.schreiber at novartis.com wrote:
> Looks interesting. What is the relationship between cytoscape and GINY?
> 
> - Mark
> 
> 
> 
> 
> 
> Gary Bader <bader at cbio.mskcc.org>
> 10/03/2005 02:23 PM
> 
>  
>         To:     Mark Schreiber/GP/Novartis at PH
>         cc:     biojava-l at biojava.org
>         Subject:        Re: [Biojava-l] Graph library
> 
> 
> Hi Mark,
>                  My favorite is Cytoscape (www.cytoscape.org), which 
> includes a graph 
> library (full disclosure - I'm involved in the project). It is LGPL. 
> You can also look at JUNG (http://jung.sourceforge.net/). It is BSD. 
> Cytoscape is better suited to biological problems than JUNG and I use it 
> with Biojava on a regular basis.
> 
> Gary
> 
> mark.schreiber at novartis.com wrote:
> 
>>Hello -
>>
>>Does anyone know of a good java graph library that is LGPL, Apache 
> 
> license 
> 
>>or similar? Not data graphing but graph as in the mathematical 
> 
> construct.
> 
>>- Mark
>>
>>Mark Schreiber
>>Principal Scientist (Bioinformatics)
>>
>>Novartis Institute for Tropical Diseases (NITD)
>>10 Biopolis Road
>>#05-01 Chromos
>>Singapore 138670
>>www.nitd.novartis.com
>>
>>phone +65 6722 2973
>>fax  +65 6722 2910
>>
>>_______________________________________________
>>Biojava-l mailing list  -  Biojava-l at biojava.org
>>http://biojava.org/mailman/listinfo/biojava-l
> 
> 
> 
>