[Biojava-l] blast parser alignment middle line
Christian.Gruber at biomax.com
Tue Apr 13 10:06:57 EDT 2004
Is there a way to get the middle line of an alignment that I parse out
of the blast output? In the example below, it would be the "S++VGTR..."
line. In the Alignment of the SeqSimilaritySearchSubHit, I only find a
Sequence entry for Query and Sbjct.
Query: 2 SFEVGTRCWYPHKELGWIGAEVIKNEFNDGKYHLEL...
S++VGTR W P GW+ +EV+K + K L ...
Sbjct: 4 SYDVGTRAWQPDPTEGWVASEVVKKTVDGNKVTLIF...
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