[Biojava-l] EMBLFileFormer changes

[Lorna Morris]

Hello

I'm using biojava to parse an EMBL Flat file, modify it, and dump it out 
to file at the end. However when I used SeqIOTools.writeEmbl the file 
created, did not have correctly ordered and nested RN, RP, RX, RA, RT 
and RL lines. These lines should occur in repeated sets, one set for 
each reference in the flat file. I've modified some of the biojava 
classes and added 2 new classes to correct this. Everthing works fine 
now. I've put the modified classes and new classes here:

www.ebi.ac.uk/~lmorris/bioJavaFiles

Files modfied:

EmblLikeFormat
EmblFileFormer
SeqIOEventEmitter
GenEmblPropertyComparator

Files added:

ReferenceAnnotation.java
EmblReferenceComparator.java

If you need any more details on the changes I've made let me know. Thanks,

Lorna