[Biojava-l] SeqIOTools.writeFasta method using Sequence object

Schreiber, Mark mark.schreiber at agresearch.co.nz
Tue Mar 18 09:55:49 EST 2003

Hi -

That method is a recent addition to BioJava, you will need to get
biojava1.3pre1 from the download site or BioJava live from the CVS

- Mark

> -----Original Message-----
> From: Takeshi Sasayama [mailto:sasayama at lmi.hitachi-sk.co.jp] 
> Sent: Monday, 17 March 2003 7:31 p.m.
> To: biojava-l at biojava.org
> Subject: [Biojava-l] SeqIOTools.writeFasta method using 
> Sequence object
> Hi,
> I wrote a script(using BioJava 1.22) which reads sequences 
> from multiple GenBank format files and write part of them in 
> FASTA format, using
> SeqIOTools.writeFasta() method. In "BioJava In Anger", it is 
> written that writeFasta can be used for printing a single 
> sequence like this: writeFasta(System.out, seq1), but I had 
> an err in this way. I looked for JavaDoc and Biojava src 
> files but there seems to be no signature using Sequence 
> object as 2nd argument.
> Does anyone have suggestion on this?
> Also any information is welcome.
> Thanks
> Takeshi Sasayama
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at biojava.org 
> http://biojava.org/mailman/listinfo/biojava-l
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
sender immediately.

More information about the Biojava-l mailing list