[Biojava-l] SeqIOTools.writeFasta method using Sequence object

Matthew Pocock matthew_pocock at yahoo.co.uk
Mon Mar 17 10:04:34 EST 2003


Hi Takeshi,

Try compiling against biojava 1.3pre1.

Takeshi Sasayama wrote:
> Hi,
> 
> I wrote a script(using BioJava 1.22) which reads sequences from multiple
> GenBank format files and write part of them in FASTA format, using
> SeqIOTools.writeFasta() method. In "BioJava In Anger", it is written that
> writeFasta can be used for printing a single sequence like this:
> writeFasta(System.out, seq1), but I had an err in this way. I looked for
> JavaDoc and Biojava src files but there seems to be no signature using
> Sequence object as 2nd argument.
> 
> Does anyone have suggestion on this?
> Also any information is welcome.
> Thanks
> 
> Takeshi Sasayama
> 
> 
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