[Biojava-l] How to extract chromosome ID from a Transcript?
Alberto Ambesi
ambesi at tigem.it
Fri Jul 4 15:39:39 EDT 2003
I can successfully extract Location and Strand features from a
transcript, but I can't find a way to get the chromosome ID where the
gene is located. I am using the following code:
SequenceDB chromosomes =ens.getChromosomes();
FeatureHolder transcripts = chromosomes.filter(
new FeatureFilter.ByAnnotation(Ensembl.TRANSCRIPT_GENEID,
ensID)
);
iter= transcripts.features();
while (iter.hasNext()) {
StrandedFeature feat = (StrandedFeature)iter.next();
System.out.println("Strand: \t" +
feat.getStrand().toString());
System.out.println("Location: \t" + feat.getLocation());
}
thanks a lot.
dr. Alberto Ambesi
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