[Biojava-l] How to extract chromosome ID from a Transcript?

[Matthew Pocock]

Hi Alberto,

You probably want to call something like:

   System.out.println("Sequnence: \t" + feat.getSequence().getName());

Matthew


Alberto Ambesi wrote:
> I can successfully extract Location and Strand features from a 
> transcript, but I can't find a way to get the chromosome ID where the 
> gene is located. I am using the following code:
> 
> SequenceDB chromosomes =ens.getChromosomes();
> FeatureHolder transcripts = chromosomes.filter(
> new FeatureFilter.ByAnnotation(Ensembl.TRANSCRIPT_GENEID, ensID)
> );
> iter= transcripts.features();
> while (iter.hasNext()) {
> StrandedFeature feat = (StrandedFeature)iter.next();
> 
> System.out.println("Strand: \t" + feat.getStrand().toString());
> 
> System.out.println("Location: \t" + feat.getLocation());
> }
> 
> thanks a lot.
> dr. Alberto Ambesi
> 
> 
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