[Biojava-l] Modelling sequence variants

[Matthew Pocock]

Hi Andrew,

Sequence variations would be a good thing to add.
Could you post us the data that you think should be
associated with a variation? That way we can work out
if we need a new Feature interface and if the data
should go into the Annotation bundle or should go into
get/set methods.

Best,

Matthew

 --- "Devereau Andrew (RW3) CM&MC Manchester"
<Andrew.Devereau at cmmc.nhs.uk> wrote: 
> Hi,
> 
> I am working on a project concerned with annotating
> and archiving variations in DNA sequences,
> especially pathogenic mutations.  I have started
> looking at BioJava, and from what I have seen so far
> it should be possible to use a Feature to model a
> variant in a Sequence.  I am wondering though if
> anyone has any experience of trying to do this, or
> if there are specific classes produced to model
> variants.
> 
> Thanks,
> 
> Andrew Devereau
> 
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