[Biojava-l] Substitution matices

[Schreiber, Mark]

Hi -

Does Biojava contain the concept of Substitution/ similarity matrices?

If not should we put in an Interface (probably in the dp package)?

Probably containing the method:

  double substitute(Symbol a, Symbol b) throws IllegalSymbolException;

Mark Schreiber
Bioinformatics
AgResearch Invermay
PO Box 50034
Mosgiel
New Zealand
 
PH:   +64 3 489 9175
FAX:  +64 3 489 3739


=======================================================================
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
sender immediately.
=======================================================================