[Biojava-l] sp-ml modules

[Keith James]

>>>>> "Matthew" == Matthew Pocock <matthew_pocock@yahoo.co.uk> writes:

    Matthew> Hi Guoneng, This sounds like a very worthwile project. Do
    Matthew> you have any URLs describing the current state of the
    Matthew> SPML format?

http://www.ebi.ac.uk/swissprot/SP-ML/

Has all the details of the draft release. One route would be

XML -> StAX (org.biojava.utils.stax)
         -> SequenceBuilder (org.biojava.bio.seq.io)

I imagine that the org.biojava.bibliography and
org.biojava.utils.candy packages will come in handy for the Swissprot
references and controlled vocabularies too.

Keith

-- 

-= Keith James - kdj@sanger.ac.uk - http://www.sanger.ac.uk/Users/kdj =-
Pathogen Sequencing Unit, Wellcome Trust Sanger Institute, Cambridge, UK