[Biojava-l] BioJava and visualization?

[Ann Loraine]

Dear Mark,

You also might want to check out Apollo, an open source genome browser
application being developed as a joint project between Ensembl
and the Berkeley Drosophila Genome Project.

(see:  http://www.fruitfly.org/annot/apollo/)

I don't believe it uses the biojava data models however.

If this is not quite what you need, you might consider checking out Jazz,
an open source toolkit for building zoomable, graphical interfaces in
Java.

It might be possible to build an application that displays biojava data
models using Jazz' 2D rendering capability.  Jazz gives you interactive,
real-time zooming "for free," and from what I've seen thus far, it's very
fast.  

Yours, 

Ann

---

Ann E. Loraine
http://www.loraine.net

On Wed, 20 Mar 2002, Wiepert, Mathieu wrote:

> Hi Mark,
> 
> I am not going to answer this well, but the tutorial at
> http://www.biojava.org/tutorials/index.html doesn't seem to have much on it
> at first glance.  I know that some of this was covered at the biojava
> bootcamp last year, I presume it will be again this year.  Matthew, Thomas
> or Ketih might have made some the bootcamp materials available to demo
> sequencerendering?
> 
> -Mat
> 
> -----Original Message-----
> From: Mark Woon [mailto:morpheus@smi.stanford.edu]
> Sent: Tuesday, March 19, 2002 6:48 PM
> To: biojava-l@biojava.org
> Subject: [Biojava-l] BioJava and visualization?
> 
> 
> Hello...
> 
> The BioJava overview mentions visualization as one of the capabilities
> of BioJava.  Are there any examples of this?  I've taken a look at the
> javadocs, but the gui package was marked as highly experimental.  Can
> anyone point me to where I can see what kind of output I can expect?
> 
> Thanks,
> -Mark
> 
> P/S - please respond by e-mail as I'm not subscribed to the list.
> 
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