[Biojava-l] Trouble with parsing big Blast result raport

[Petri Pehkonen]

Hi,

I'm using Java SDK Standard Edition 1.3.1 under Windows 2000. I tried to
change the virtual machine to "classic" but it didn't help and I got the
same error message. I wonder if anyone has made parsing with result files
as big as ours?  

-Petri Pehkonen-

On Tue, 8 Jan 2002, Simon Brocklehurst wrote:

> Petri Pehkonen wrote:
> 
> > Hello,
> >
> > When parsing Blast-result-raport with BlastLikeSAXParser and using
> > TutorialEx1Handler shown in demos in cvs.biojava.org as a contenthandler,
> > I get errormessage like this:
> > ---------------------------
> > #
> > # An EXCEPTION_STACK_OVERFLOW exception has been detected in native code
> > outside the VM.
> > # Program counter=0x77e873a2
> > #
> > ---------------------------
> 
> Hi,
> 
> Could you let us know which version of Java you are using, and on which
> platform?  One thing you could try is using a different virtual machine, or
> playing with VM configuration options.
> 
> S.
> --
> Simon M. Brocklehurst, Ph.D.
> Head of Bioinformatics & Advanced IS
> Cambridge Antibody Technology
> The Science Park, Melbourn, Cambridgeshire, UK
> http://www.CambridgeAntibody.com/
> mailto:simon.brocklehurst@CambridgeAntibody.com
> 
>