[Biojava-l] Trouble with parsing big Blast result raport

[Simon Brocklehurst]

Petri Pehkonen wrote:

> Hello,
>
> When parsing Blast-result-raport with BlastLikeSAXParser and using
> TutorialEx1Handler shown in demos in cvs.biojava.org as a contenthandler,
> I get errormessage like this:
> ---------------------------
> #
> # An EXCEPTION_STACK_OVERFLOW exception has been detected in native code
> outside the VM.
> # Program counter=0x77e873a2
> #
> ---------------------------

Hi,

Could you let us know which version of Java you are using, and on which
platform?  One thing you could try is using a different virtual machine, or
playing with VM configuration options.

S.
--
Simon M. Brocklehurst, Ph.D.
Head of Bioinformatics & Advanced IS
Cambridge Antibody Technology
The Science Park, Melbourn, Cambridgeshire, UK
http://www.CambridgeAntibody.com/
mailto:simon.brocklehurst@CambridgeAntibody.com