[Biojava-l] ClustalW enquiry

[Francois Pepin]

I haven't had the time to check all of biojava for that, but I have code
to call external applications here.

Or you can look at the Runtime class (more specifically Runtime.exec()),
that's the java command to call outside stuff.

Francois

-----Original Message-----
From: biojava-l-admin@biojava.org [mailto:biojava-l-admin@biojava.org]
On Behalf Of suyee
Sent: 16 decembre, 2002 01:37
To: biojava-l@biojava.org
Subject: [Biojava-l] ClustalW enquiry


Hi,    
  I am Su Yee, a polytechnic student from Singapore. Currently, i am
doingon a project on ClustalW.
  can anybody tell me how to use Java call the clustalw.exe and pass in
all the parameters needed as i dont have enough time to convert all the
clustalw C code into Java Language.
   Besides that, i still unclear with the pairwise alignment -
fast/approximate part, is there any tutorial/ website i can refer to.
   Ur feedback is value to me, Waiting for ur answer.  
   Thanks a lot.Lee Su Yee

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