[Biojava-dev] ExternalProcess class

[Scooter Willis]

Biojava already has a Clustalw class that executes Clustalw as an external process  if that is your larger goal.

http://www.biojava.org/wiki/BioJava:Tutorial:MultiAlignClustalW

Thanks

Scooter
________________________________________
From: biojava-dev-bounces at lists.open-bio.org [biojava-dev-bounces at lists.open-bio.org] On Behalf Of Sylvain Foisy [sylvain.foisy at diploide.net]
Sent: Friday, July 10, 2009 12:43 PM
To: biojava-dev at lists.open-bio.org
Subject: Re: [Biojava-dev] ExternalProcess class

Hi,

There is no such example to the best of my knowledge. If you do use this
class, you are welcome to share your experience by contributing. As far as
running something like clustalw, I don't see why you could not make use of
this class. You could actually build a wrapper class to execute clustalw and
do something with its output.

Best regards

Sylvain

On 10/07/09 12:00, "[NAME]" <[ADDRESS]> wrote:

> Hi everyone,
>
> Do somebody have (as examples of biojava cookbook) a usage example of
> ExternalProcess class ?
>
> Let's say we want to run a local clustalw program with it, is it possible ?
>
> Any example code ?
>
> Thank you


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 Sylvain Foisy, Ph. D.
 Consultant Bio-informatique / Bioinformatics
 Diploide.net - TI pour la vie / IT for Life

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 Web: http://www.diploide.net
 Tel: (514) 893-4363
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