[Biojava-dev] ExternalProcess class

[Sylvain Foisy]

Hi Scooter,

Actaully, this is not into BJ 1.7. This material was created by Dickson
Guedes but never formalized into a class for BJ. Maybe it would be the time
to do so?

Best regards

Sylvain


On 11/07/09 07:08, "[NAME]" <[ADDRESS]> wrote:

> Biojava already has a Clustalw class that executes Clustalw as an external
> process  if that is your larger goal.
> 
> http://www.biojava.org/wiki/BioJava:Tutorial:MultiAlignClustalW
> 
> Thanks
> 
> Scooter
> ________________________________________
> From: biojava-dev-bounces at lists.open-bio.org
> [biojava-dev-bounces at lists.open-bio.org] On Behalf Of Sylvain Foisy
> [sylvain.foisy at diploide.net]
> Sent: Friday, July 10, 2009 12:43 PM
> To: biojava-dev at lists.open-bio.org
> Subject: Re: [Biojava-dev] ExternalProcess class
> 
> Hi,
> 
> There is no such example to the best of my knowledge. If you do use this
> class, you are welcome to share your experience by contributing. As far as
> running something like clustalw, I don't see why you could not make use of
> this class. You could actually build a wrapper class to execute clustalw and
> do something with its output.
> 
> Best regards
> 
> Sylvain
> 
> On 10/07/09 12:00, "[NAME]" <[ADDRESS]> wrote:
> 
>> Hi everyone,
>> 
>> Do somebody have (as examples of biojava cookbook) a usage example of
>> ExternalProcess class ?
>> 
>> Let's say we want to run a local clustalw program with it, is it possible ?
>> 
>> Any example code ?
>> 
>> Thank you
> 
> 
> ===================================================================
> 
>  Sylvain Foisy, Ph. D.
>  Consultant Bio-informatique / Bioinformatics
>  Diploide.net - TI pour la vie / IT for Life
> 
>  Courriel: sylvain.foisy at diploide.net
>  Web: http://www.diploide.net
>  Tel: (514) 893-4363
> ===================================================================
> 
> 
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