[Biojava-dev] unigene

[Matthew Pocock]

OK - I broke the repository with this commit. Thanks to David H, 
everything seems to be back together now. There are lots more unigene 
goodies in now. You can index a local unigene install (this uses the 
OBDA indexing protocols) and then randomly access it via the 
UnegeneTools class. I will plug in the random access for the actual 
sequences as/when I get arround to it. I hope it's usefull to someone.

Matthew

Matthew Pocock wrote:
> Hi,
> 
> I've checked in a 1st parse at a unigene package. We can parse the *data 
> files and build annotation bundles from them, or just listen to the 
> parse events. There is a single interface - UnigeneCluster - and a tools 
> class. Also, there's a demo under demo-1.4/unigene that shows how to use 
> the parser.
> 
> I will probably be working on this over the next couple of days to 
> provide a bridge to the text files you get when you download unigene. 
> This will probably involve getting our flat-file indexer working as I 
> don't fancy loading 7.3G of data files into memory.
> 
> If anyone has any thoughts about what the unigene API should look like, 
> now's the time to shout.
> 
> Matthew


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