[Biojava-dev] KMP matcher

[Schreiber, Mark]

Hi -

I have written (almost, minor debugging to go) an implementation of the
Knuth-Moore-Pratt algorithm for rapidly finding exact substrings in a
String. Actually I've biojava'd it to find sub sequences in a sequence.
Could be useful for the restriction enzyme search problem or finding the
location of probes in large sequences.

Anyhow my question is, in which package does it belong?

- Mark


Mark Schreiber
Bioinformatics
AgResearch Invermay
PO Box 50034
Mosgiel
New Zealand
 
PH:   +64 3 489 9175
FAX:  +64 3 489 3739

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