[Open-bio-l] Re: scripts to populate the biosql db??

[sampath krishna]

Chris M's instructions below work for the bioperl-db CVS tree.

However, I am unable to download any data from the Whitehead URL:
http://carbon.wi.mit.edu:8000/ftp/pub/human_STS_releases/may97/ or
.../rhmap/.

I will try again later, but just wondered if the URL has changed or the
site is temporarily down... I was using the perl script:
download_marker_data.pl -all

/krishna

-- 
Sampath Krishna
IS & Wireless Technologist
+1 (617) 818-5686 (W)                      sampathkrishna@attbi.com


> From: Chris Mungall <cjm@bdgp.lbl.gov>
> 
> On Fri, 19 Apr 2002, Brian Gilman wrote:
> 
> > Hello guys,
> >
> > 	Has anyone (Chris M??) written any scripts to populate the biosql
> > db? If so where are they?
> 
> they're in the bioperl-db cvs repository
> 
> the scripts work with both mysql and pg, but I had to put in a hack for
> the pg adapter that is kind of braindead and makes it load really slowly.
> Until I get round to fixing it, you're probably best using the biojava
> loader for pg.
> 
> If you don't mind the speed, I think this will work for getting the code:
> 
> cvs -d :pserver:cvs@cvs.bioperl.org:/home/repository/bioperl login
> 
> [enter CVS as passwork]
> 
> then do
> 
> cvs -d :pserver:cvs@cvs.bioperl.org:/home/repository/bioperl co bioperl-db
> 
> > 			Thanks!!
> >