[MOBY] [MOBY-l] Services on MOBYClient

[Mark Wilkinson]

What was your registration code/XML - your service is registered as
consuming "Object" rather than "Global_Keyword"... probably why you
can't discover it in your search.

M


On Fri, 2003-12-05 at 13:47, Simon Twigger wrote:
> Hi there,
> 
> I've been using Ken's MobyEd examples to get a service up and
> running(the docs were very useful, thanks) and all seems to be well.
> It takesa Global_Keyword and looks at the list of genes in RGD and if
> thatgene is in RGD returns a String containing the official symbol
> andcross reference data (currently only PMIDs). This is a
> marginallyuseful service that Im using as a test case.
> 
> Sample output for comments/vetting. I ran a query using 'Atp1a1',
> theservice ('keywordToGene') returned the following
> 
> <?xml version='1.0'encoding='UTF-8'?>
> <moby:MOBYxmlns:moby='http://www.biomoby.org/moby'>
>         <moby:Responsemoby:authority='http://www.illuminae.com'>      
>         <moby:queryResponse>
>             <Simple>    
>         <moby:String moby:namespace="RGD"
> moby:id="Atp1a1"moby:articleName="geneSymbol">
>         Atp1a1
>         </moby:String>
>         <CrossReference>
>                 <Object moby:namespace="PMID" moby:id="1363813"/>
>        <Object moby:namespace="PMID" moby:id="8040284"/>
>         </CrossReference>
>             </Simple>
>         </moby:queryResponse>
>     </moby:Response>
> </moby:MOBY>
> 
> 
> I can register the service and it appears on Ken's
> list_services.cgi,however, it doesnt seem to appear on the MOBYClient
> when I selectGlobal_Keyword as an input. I was wondering if the Client
> is either(a) still looking live at services on MOBY-Central and my
> serviceregistration isnt working as it should, or (b) new services
> dontappear by default (not a bad idea given how crowded things get
> aspeople test things) and so it will not appear simply by registering
> atMOBY-Central.
> 
> Does anyone have any suggestions?
> 
> Cheers,
> 
> Simon.
> 
> --------------------------------------------------------------------------------------------------
> Simon Twigger, Ph.D.
> Assistant Professor, Bioinformatics Research Center
> 
> Medical College of Wisconsin
> 8701 Watertown Plank Road, 
> Milwaukee, WI, 53226
> tel. 414-456-8802, fax 414-456-6595
> 
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-- 
Mark Wilkinson <markw at illuminae.com>
Illuminae