[MOBY-dev] Executing Moby Workflow straight from java

[Edward Kawas]

Hi Jerzy,

You can execute workflows from the command line too if you have your input
file for the workflows handy.

If you want to create workflows programmatically, you will need to look at
the javadoc for the taverna source code.

You should probably explore the taverna website[1] and its manual[2] for
more information. 

Eddie

[1] http://taverna.sourceforge.net/
[2] http://taverna.sourceforge.net/doc

-----Original Message-----
From: moby-dev-bounces at lists.open-bio.org
[mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of Jerzy Orlowski
Sent: September-11-08 7:22 AM
To: moby-dev at lists.open-bio.org
Subject: [MOBY-dev] Executing Moby Workflow straight from java

Hi

I have several hundreds of workflows made up of BioMoby Services and 
want to execute them all without opening any GUI.

I was looking for some solution over the internet and the think I came 
across was using Taverna plugin and try to execute it programaticaly.
I have a few questions:

1. Is it the only way?

2. I found several tutorial tutorials on running  saved workflow saved 
in scufl language.
http://www.mygrid.org.uk/usermanual1.7/executeworkflowprogram_source.html

How do you one make a workflow step by step? like:

workflow.addProcesor(...)
workflow.addConnector(...)
...
workflow.execute()

and especially, how do one add BioMoby objects this way? Is there any 
tutorial or do I have go though the API?

Best

Jerzy Orlowski

_______________________________________________
MOBY-dev mailing list
MOBY-dev at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/moby-dev