[MOBY-dev] jmoby class for workflow. Does it exist?

[Sergio Ramirez Ramirez]

Thank you very much

Best Sergio.

Andreas Groscurth wrote:
> Hi Sergio,
>
> if you follow the mail list correspondance of the taverna list
>
> http://markmail.org/message/x5vtct5hbovnj3zy#query:%22anika%20joecker%22+page:1+mid:ko2eo5moj6atnoeu+state:results 
>
>
> you will find the same question with answer and links to your problem.
>
> best
> andreas
>
> Sergio Ramirez Ramirez wrote:
>> Hello Jerzy
>>
>> Unfortunately, moby can not handle workflows by itself for now. 
>> Normally you use taverna for building workflows.
>> I'm trying to learn how to use Taverna libraries to run workflows. 
>> There is a taverna class (workflowlauncher or similar) available in 
>> the web page for taverna, but I couldn't make it work.
>>
>> I'm also very interesting in this topic.
>> Greetings, Sergio
>>
>> Jerzy Orlowski wrote:
>>> Hello
>>>
>>> I am searchng for a java class representing a BioMoby workflow:
>>>
>>> I found some classes that represent connections:
>>> datatype -> service
>>> service -> datatype
>>> datatype -> datatype
>>> in org.biomoby.client.
>>> (There is even a class for drawing graphs using graphviz, but 
>>> unfortunately without datatype -> datatype connections.)
>>>
>>> I do not find find any class that these connections gathers them 
>>> together as a workflow and enables execution of this workflow given 
>>> some inputs.
>>>
>>> Does such class exist in jMoby? Or should I run my workflows using 
>>> Taverna libraries (How should I do it)?
>>> If it does not exist I will probably write it but maybe somebody is 
>>> already doing it.
>>>
>>> Jerzy Orlowski
>>>
>>> _______________________________________________
>>> MOBY-dev mailing list
>>> MOBY-dev at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/moby-dev
>>>
>>
>>
>
>


-- 
Sergio Ramírez Ramírez
Instituto Nacional de Bioinformática (INB)
Integrated Bioinformatics Node (GNV-5)
Dpto. de Arquitectura de Computadores
Campus Universitario de Teatinos, despacho 2.3.9a
29071 Málaga (Spain) +34 95 213 3387


"Short-term decisions tend to fail in the long-term."
            Frank Herbert, God Emperor of Dune