[MOBY-dev] jmoby class for workflow. Does it exist?

[Andreas Groscurth]

Hi Sergio,

if you follow the mail list correspondance of the taverna list

http://markmail.org/message/x5vtct5hbovnj3zy#query:%22anika%20joecker%22+page:1+mid:ko2eo5moj6atnoeu+state:results

you will find the same question with answer and links to your problem.

best
andreas

Sergio Ramirez Ramirez wrote:
> Hello Jerzy
>
> Unfortunately, moby can not handle workflows by itself for now. 
> Normally you use taverna for building workflows.
> I'm trying to learn how to use Taverna libraries to run workflows. 
> There is a taverna class (workflowlauncher or similar) available in 
> the web page for taverna, but I couldn't make it work.
>
> I'm also very interesting in this topic.
> Greetings, Sergio
>
> Jerzy Orlowski wrote:
>> Hello
>>
>> I am searchng for a java class representing a BioMoby workflow:
>>
>> I found some classes that represent connections:
>> datatype -> service
>> service -> datatype
>> datatype -> datatype
>> in org.biomoby.client.
>> (There is even a class for drawing graphs using graphviz, but 
>> unfortunately without datatype -> datatype connections.)
>>
>> I do not find find any class that these connections gathers them 
>> together as a workflow and enables execution of this workflow given 
>> some inputs.
>>
>> Does such class exist in jMoby? Or should I run my workflows using 
>> Taverna libraries (How should I do it)?
>> If it does not exist I will probably write it but maybe somebody is 
>> already doing it.
>>
>> Jerzy Orlowski
>>
>> _______________________________________________
>> MOBY-dev mailing list
>> MOBY-dev at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/moby-dev
>>
>
>


-- 
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  Dipl. Bioinf. Andreas Groscurth
  Bioinformatics Software Developer
  Plant Computational Biology group
  Max-Planck Institute for plant breeding research
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  Germany
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