[Bioperl-pipeline] Fwd: Re: trouble installing XML:Parser

[Elia Stupka]

Sending this to our trused Chen Peng, who might have a solution?

Elia

On Fri, 22 Nov 2002, Andy Nunberg wrote:

> Since Kiran is gonna be gone for quite some time, 
> I thought I might throw this out to the list
> 
> >Date: Fri, 01 Nov 2002 09:53:34 -0600
> >To: "kiran" <kiran@fugu-sg.org>
> >From: Andy Nunberg <anunberg@oriongenomics.com>
> >Subject: Re: trouble installing XML:Parser
> >
> >Thanks Kiran that worked fine,
> >now I have aproblem with  XML-SimpleObject0.51
> >this is what i did for the perl Makefile.PL
> >$perl Makefile.PL PREFIX=/compbio/dev
> >NOTE: XML::SimpleObject requires XML::Parser. If you have XML::LibXML, you 
> >can install XML::SimpleObject::LibXML instead.
> >
> >Checking for XML::Parser ... 
> >OK
> >Checking if your kit is complete...
> >Looks good
> >NOTE: XML::SimpleObject::LibXML requires XML::LibXML. If you have XML::Parser
> >you can install XML::SimpleObject instead.
> >
> >Checking for XML::LibXML ... 
> >WARNING from evaluation of 
> >/auto/nfs/l01/compbio/dev/XML-SimpleObject0.51/LibXML/Makefile.PL: Can't 
> >locate XML/LibXML.pm in @INC (@INC contains: /compbio/lib/modules 
> >/compbio/lib/bioperl-1.0.2 /usr/lib/perl5/5.6.0/i386-linux 
> >/usr/lib/perl5/5.6.0 /usr/lib/perl5/site_perl/5.6.0/i386-linux 
> >/usr/lib/perl5/site_perl/5.6.0 /usr/lib/perl5/site_perl .) at (eval 20)
> line 8.
> >Writing Makefile for XML::SimpleObject
> >
> >I assume that is means the Makefile is going to install XML::SimpleObject 
> >and not XML::SimpleObject::LibXML
> >
> >then after make i get this
> >mkdir blib
> >mkdir blib/lib
> >mkdir blib/lib/XML
> >mkdir blib/arch
> >mkdir blib/arch/auto
> >mkdir blib/arch/auto/XML
> >mkdir blib/arch/auto/XML/SimpleObject
> >mkdir blib/lib/auto
> >mkdir blib/lib/auto/XML
> >mkdir blib/lib/auto/XML/SimpleObject
> >mkdir blib/man3
> >cp SimpleObject.pm blib/lib/XML/SimpleObject.pm
> >cp ex.pl blib/lib/XML/ex.pl
> >make[1]: Entering directory 
> >`/auto/nfs/l01/compbio/dev/XML-SimpleObject0.51/LibXML'
> >make[1]: *** No rule to make target `all'.  Stop.
> >make[1]: Leaving directory 
> >`/auto/nfs/l01/compbio/dev/XML-SimpleObject0.51/LibXML'
> >make: *** [subdirs] Error 2
> >
> >why is it looking there? any ideas how to fix?
> >Andy
> >
> >At 10:43 AM 10/30/2002 +0800, you wrote:
> >>Hi Andy,
> >>
> >>> >i used  perl Makefile.PL PREFIX=/compbio/dev INSTALLDIRS=dev
> >>
> >>I checked and installed it. Try the following
> >>
> >>Use only   perl Makefile.PL PREFIX=/compbio/dev to write the Makefile. 
> >>
> >>dont specify the INSTALLDIRS option at all.
> >>
> >>let me know if you have problems.
> >>
> >>Kiran
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>> >I see this in the Makefile
> >>> >
> >>> >pure_install :: pure_$(INSTALLDIRS)_install
> >>> >
> >>> >any suggestions??
> >>> >
> >>> >Thanks
> >>> >Andy
> >>> 
> >>> *******************************************************************
> >>> Andy Nunberg, Ph.D
> >>> Computational Biologist
> >>> Orion Genomics, LLC 
> >>> (314) 615-6989
> >>> http://www.oriongenomics.com
> >>> 
> 
> *******************************************************************
> Andy Nunberg, Ph.D
> Computational Biologist
> Orion Genomics, LLC 
> (314) 615-6989
> http://www.oriongenomics.com
> 
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> bioperl-pipeline mailing list
> bioperl-pipeline@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-pipeline
> 

Elia

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