[Bioperl-pipeline] Fwd: Re: trouble installing XML:Parser

[Andy Nunberg]

Since Kiran is gonna be gone for quite some time, 
I thought I might throw this out to the list

>Date: Fri, 01 Nov 2002 09:53:34 -0600
>To: "kiran" <kiran@fugu-sg.org>
>From: Andy Nunberg <anunberg@oriongenomics.com>
>Subject: Re: trouble installing XML:Parser
>
>Thanks Kiran that worked fine,
>now I have aproblem with  XML-SimpleObject0.51
>this is what i did for the perl Makefile.PL
>$perl Makefile.PL PREFIX=/compbio/dev
>NOTE: XML::SimpleObject requires XML::Parser. If you have XML::LibXML, you 
>can install XML::SimpleObject::LibXML instead.
>
>Checking for XML::Parser ... 
>OK
>Checking if your kit is complete...
>Looks good
>NOTE: XML::SimpleObject::LibXML requires XML::LibXML. If you have XML::Parser
>you can install XML::SimpleObject instead.
>
>Checking for XML::LibXML ... 
>WARNING from evaluation of 
>/auto/nfs/l01/compbio/dev/XML-SimpleObject0.51/LibXML/Makefile.PL: Can't 
>locate XML/LibXML.pm in @INC (@INC contains: /compbio/lib/modules 
>/compbio/lib/bioperl-1.0.2 /usr/lib/perl5/5.6.0/i386-linux 
>/usr/lib/perl5/5.6.0 /usr/lib/perl5/site_perl/5.6.0/i386-linux 
>/usr/lib/perl5/site_perl/5.6.0 /usr/lib/perl5/site_perl .) at (eval 20)
line 8.
>Writing Makefile for XML::SimpleObject
>
>I assume that is means the Makefile is going to install XML::SimpleObject 
>and not XML::SimpleObject::LibXML
>
>then after make i get this
>mkdir blib
>mkdir blib/lib
>mkdir blib/lib/XML
>mkdir blib/arch
>mkdir blib/arch/auto
>mkdir blib/arch/auto/XML
>mkdir blib/arch/auto/XML/SimpleObject
>mkdir blib/lib/auto
>mkdir blib/lib/auto/XML
>mkdir blib/lib/auto/XML/SimpleObject
>mkdir blib/man3
>cp SimpleObject.pm blib/lib/XML/SimpleObject.pm
>cp ex.pl blib/lib/XML/ex.pl
>make[1]: Entering directory 
>`/auto/nfs/l01/compbio/dev/XML-SimpleObject0.51/LibXML'
>make[1]: *** No rule to make target `all'.  Stop.
>make[1]: Leaving directory 
>`/auto/nfs/l01/compbio/dev/XML-SimpleObject0.51/LibXML'
>make: *** [subdirs] Error 2
>
>why is it looking there? any ideas how to fix?
>Andy
>
>At 10:43 AM 10/30/2002 +0800, you wrote:
>>Hi Andy,
>>
>>> >i used  perl Makefile.PL PREFIX=/compbio/dev INSTALLDIRS=dev
>>
>>I checked and installed it. Try the following
>>
>>Use only   perl Makefile.PL PREFIX=/compbio/dev to write the Makefile. 
>>
>>dont specify the INSTALLDIRS option at all.
>>
>>let me know if you have problems.
>>
>>Kiran
>>
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>>> >I see this in the Makefile
>>> >
>>> >pure_install :: pure_$(INSTALLDIRS)_install
>>> >
>>> >any suggestions??
>>> >
>>> >Thanks
>>> >Andy
>>> 
>>> *******************************************************************
>>> Andy Nunberg, Ph.D
>>> Computational Biologist
>>> Orion Genomics, LLC 
>>> (314) 615-6989
>>> http://www.oriongenomics.com
>>> 

*******************************************************************
Andy Nunberg, Ph.D
Computational Biologist
Orion Genomics, LLC 
(314) 615-6989
http://www.oriongenomics.com