[Bioperl-pipeline] Requirements for pipeline installation

[Elia Stupka]

> I ran make test and got several errors.

Hmm.... there are two issues. One is that bioperl-run is actually not very
polished right now because we were not the maintainers of it, we should
look into this, I seem to get a few errors too.

But the other issue is that you don't seem to have in the path some normal
things like some of the tools. Best thing is if you checkout the main
trunk of bioperl, rather than a stable branch, see if you have the same
problem. Also please check that both bioperl-run, bioperl-live and
bioperl-pipeline are in your PERL5LIB

The other common error is that of not finding binaries, but that is ok, as
long as you are not interested in those binaries.

On Monday I will triple-check that all tests pass on bioperl-run and get
back to you (now it's Friday night, off for some rest)

Elia

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