[Bioperl-pipeline] Requirements for pipeline installation

[shawnh@worf.fugu-sg.org]

Yeah the only ones that fail for me are Emboss and Clustalw which 
are not maintained by us.  I'm sure by the next release about in a month,those 
will be fixed.

shawn


On Fri, 23 Aug 2002, Elia Stupka wrote:

> > I ran make test and got several errors.
> 
> Hmm.... there are two issues. One is that bioperl-run is actually not very
> polished right now because we were not the maintainers of it, we should
> look into this, I seem to get a few errors too.
> 
> But the other issue is that you don't seem to have in the path some normal
> things like some of the tools. Best thing is if you checkout the main
> trunk of bioperl, rather than a stable branch, see if you have the same
> problem. Also please check that both bioperl-run, bioperl-live and
> bioperl-pipeline are in your PERL5LIB
> 
> The other common error is that of not finding binaries, but that is ok, as
> long as you are not interested in those binaries.
> 
> On Monday I will triple-check that all tests pass on bioperl-run and get
> back to you (now it's Friday night, off for some rest)
> 
> Elia
> 
> ********************************
> * http://www.fugu-sg.org/~elia *
> * tel:    +65 6874 1467        *
> * mobile: +65 9030 7613        *
> * fax:    +65 6779 1117        *
> ********************************
> 
> 
> _______________________________________________
> bioperl-pipeline mailing list
> bioperl-pipeline@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-pipeline
> 

-- 
'Torture the data long enough and they will reveal anything'
********************************
* Shawn Hoon
* http://www.fugu-sg.org/~shawnh
********************************