[MOBY-l] [moby] Question about Object Ontology
Mark Wilkinson
markw at illuminae.com
Tue Mar 7 17:26:06 UTC 2006
=================
The Official way:
The "retrieveResourceURLs" API call of MOBY Central (implemented in both
the Perl and the Java clients, I believe) will give you the URL's from
which you can download the various MOBY ontologies.
http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Docs/MOBY-
S_API/XMLPayloads.html#retrieveResourceURLs
===================
===================
"Fast" (but not supported) way:
At the moment, the Object ontology is at:
http://mobycentral.icapture.ubc.ca/RESOURCES/MOBY-S/Objects/
====================
The ontologies are returned in RDF, and can be viewed in any RDF-capable
viewer. There are some tools in the MOBY CVS that are specifically
designed to browse/edit the ontologies - e.g. Martin Senger's MOBY
Dashboard. Which tool you chose depends on what you need to use the
ontologies for, I guess...
Hope that helps!
M
On Tue, 2006-03-07 at 12:06 -0500, Sean Zhou wrote:
> Hi there,
>
>
>
> I am a new comer for BioMOBY. I have two questions related to Object Ontology
> in BioMOBY.
>
> 1) Where can I download Object Ontology?
>
> 2) What tool shall I use to view it?
>
>
>
> Thank you very much for the help.
>
>
>
> Best,
>
>
>
> Sean
>
>
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> moby-l mailing list
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--
--
Mark Wilkinson
Asst. Professor, Dept. of Medical Genetics
University of British Columbia
PI in Bioinformatics, iCAPTURE Centre
St. Paul's Hospital, Rm. 166, 1081 Burrard St.
Vancouver, BC, V6Z 1Y6
tel: 604 682 2344 x62129
fax: 604 806 9274
"For most of this century we have viewed communications as a conduit,
a pipe between physical locations on the planet.
What's happened now is that the conduit has become so big and interesting
that communication has become more than a conduit,
it has become a destination in its own right..."
Paul Saffo - Director, Institute for the Future
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