[MOBY-l] Prototype Biomoby Taverna Plugin

[Twigger Simon]

Installing the new jars seemed to break my Mac version of taverna  
1.1, no MOBY list came up in the available processors and I couldnt  
make it create a new one from MOBY Central.

Simon.


On Jun 2, 2005, at 3:25 PM, Eddie Kawas wrote:

> Hi,
>
> http://bioinfo.icapture.ubc.ca/ekawas/biomobyPlugin.zip
>
> The above link is to a zip file consisting of 6 jar files.
> If you place these jar files in the lib directory, where you
> installed Taverna, typically /taverna-workbench-1.1/lib/ and
> you delete
> /taverna-workbench-1.1/lib/jmoby.jar,
> you *may* have new and improved Moby support for Taverna.
> The reason that I say may have, is because I have only tried
> this on my windows machine.
>
> Note that right now, the plugin only queries the Mobycentral
> registry. You can still ask it to use yours, but it will not
> work 100%.
>
> Also note that the local widgets do not work (well, that's a
> lie, the create collection widget works).
>
> http://bioinfo.icapture.ubc.ca/ekawas/workflow.xml
> http://bioinfo.icapture.ubc.ca/ekawas/workflowInput.xml
>
> Above is are urls to a workflow definition file (you can
> load it into Taverna) as well as its inputs, as an example
> of how to use the plugin.
>
> I have added some context (right) click information to Moby
> objects and services. You can try this from the window
> labeled 'Advanced Model Explorer'. Basically, right-click a
> Moby related object or service instance from the
> 'Processors' list and choose either 'Moby Object Details' or
> 'Moby Service Details'.
>
> I am interested in all feedback both good and bad. I still
> have a lot to do, but I figure that the more eyes trying
> (testing) will help me make it better. This is a working
> prototype, in the spirit of BioMoby ;-)
>
> If I make significant changes, I will let you know.
>
> Thanks,
>
> Eddie Kawas
> edward.kawas at gmail.com
>
>
> _______________________________________________
> moby-l mailing list
> moby-l at biomoby.org
> http://biomoby.org/mailman/listinfo/moby-l
>

--

Simon N. Twigger, Ph.D.
Assistant Professor, Department of Physiology
Medical College of Wisconsin
8701 Watertown Plank Road,
Milwaukee, WI, USA
tel: 414-456-8802
fax: 414-456-6595
AIM/iChat: simontatmcw