[MOBY-l] Prototype Biomoby Taverna Plugin

[Mark Wilkinson]

Works for me...???

Nice!!

M



Eddie Kawas wrote:

>I have to say that I am confused. 
>
>I just went to a machine that I have never been on. It is a
>windows machine with java 1.4 (I am running 1.5 on my work
>station). I downloaded the Taverna workbench from
>http://prdownloads.sourceforge.net/taverna/taverna-workbench
>-1.1.zip?download
>And then I downloaded my zip file. I unzipped the file into
>the /taverna-workbench-1.1/lib/ and removed jmoby.jar. I ran
>Taverna using runme.bat. I then successfully added Moby
>processors to the workflow.
>
>Tom, what errors are you seeing? As for the /lib/ext
>question, I haven't added any libraries here and I don't
>have any endorsed libraries either.
>
>Eddie
>
>
>
>  
>
>>-----Original Message-----
>>From: Tom Oinn [mailto:tmo at ebi.ac.uk]
>>Sent: Thursday, June 02, 2005 2:35 PM
>>To: Eddie Kawas
>>Cc: moby-l at biomoby.org; dgpisano at cnb.uam.es
>>Subject: Re: [MOBY-l] Prototype Biomoby Taverna Plugin
>>
>>Eddie Kawas wrote:
>>    
>>
>>>Hi,
>>>
>>>http://bioinfo.icapture.ubc.ca/ekawas/biomobyPlugin.zip
>>>
>>>The above link is to a zip file consisting of 6 jar
>>>      
>>>
>>files.
>>    
>>
>>>If you place these jar files in the lib directory, where
>>>      
>>>
>>you
>>    
>>
>>>installed Taverna, typically /taverna-workbench-1.1/lib/
>>>      
>>>
>>and
>>    
>>
>>>you delete
>>>/taverna-workbench-1.1/lib/jmoby.jar,
>>>you *may* have new and improved Moby support for
>>>      
>>>
>Taverna.
>  
>
>>>The reason that I say may have, is because I have only
>>>      
>>>
>>tried
>>    
>>
>>>this on my windows machine.
>>>      
>>>
>>Eddie - I get 'no such method' errors here, do you have
>>any XML APIs in
>>your system classpath (/jre/lib/ext and friends) and which
>>version of
>>Java are you using? I'm running a clean install
>>(yesterday) of WinXP SP2
>>with Java5 SDK.
>>
>>Looks promising though - we're going for a Taverna 1.2
>>release in two
>>weeks time so with a bit of luck this will all be there
>>for ISMB / BOSC :)
>>
>>Tom
>>    
>>
>
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>
>  
>