[MOBY-l] Prototype Biomoby Taverna Plugin

[Eddie Kawas]

I have to say that I am confused. 

I just went to a machine that I have never been on. It is a
windows machine with java 1.4 (I am running 1.5 on my work
station). I downloaded the Taverna workbench from
http://prdownloads.sourceforge.net/taverna/taverna-workbench
-1.1.zip?download
And then I downloaded my zip file. I unzipped the file into
the /taverna-workbench-1.1/lib/ and removed jmoby.jar. I ran
Taverna using runme.bat. I then successfully added Moby
processors to the workflow.

Tom, what errors are you seeing? As for the /lib/ext
question, I haven't added any libraries here and I don't
have any endorsed libraries either.

Eddie



> -----Original Message-----
> From: Tom Oinn [mailto:tmo at ebi.ac.uk]
> Sent: Thursday, June 02, 2005 2:35 PM
> To: Eddie Kawas
> Cc: moby-l at biomoby.org; dgpisano at cnb.uam.es
> Subject: Re: [MOBY-l] Prototype Biomoby Taverna Plugin
> 
> Eddie Kawas wrote:
> > Hi,
> >
> > http://bioinfo.icapture.ubc.ca/ekawas/biomobyPlugin.zip
> >
> > The above link is to a zip file consisting of 6 jar
> files.
> > If you place these jar files in the lib directory, where
> you
> > installed Taverna, typically /taverna-workbench-1.1/lib/
> and
> > you delete
> > /taverna-workbench-1.1/lib/jmoby.jar,
> > you *may* have new and improved Moby support for
Taverna.
> > The reason that I say may have, is because I have only
> tried
> > this on my windows machine.
> 
> Eddie - I get 'no such method' errors here, do you have
> any XML APIs in
> your system classpath (/jre/lib/ext and friends) and which
> version of
> Java are you using? I'm running a clean install
> (yesterday) of WinXP SP2
> with Java5 SDK.
> 
> Looks promising though - we're going for a Taverna 1.2
> release in two
> weeks time so with a bit of luck this will all be there
> for ISMB / BOSC :)
> 
> Tom