[MOBY-l] Taverna & MOBY services

[Twigger Simon]

Michael,

I hadnt seen those, I also didnt read further into the taverna docs and 
there does seem to be a bunch of MOBY info and examples so I think I 
need to RTFM some more and that will certainly help!

Thanks for pointing out the examples.

Simon.


On Jan 20, 2005, at 4:36 PM, Michael Jensen wrote:

> Did you try the Dragon DB Annotated Images example workflow that comes
> with the Taverna examples? That one works well and can be used to help
> you figure out others.
>
> -Michael
>
>
> On Thu, 20 Jan 2005 16:30:51 -0600, Twigger Simon <simont at mcw.edu> 
> wrote:
>> Hi there,
>>
>> Im trying to get a quick MOBY service up and running using Taverna and
>> its not working quite as I would like.
>>
>> I deregistered my old keywordToGene service, moved it to a new 
>> machine,
>> updated the MOBY code to 0.8 and reregistered the service. Ive checked
>> it out using the gbrowse client and it seems to behave appropriately.
>> Querying with a global_keyword seed text of A2m brings back the 
>> correct
>> information. However, if I set something up in Taverna to send the 
>> same
>> text to the service it always fails, the stack trace in the terminal
>> seems to indicate a perl problem with an error thrown by XML::Parser
>>
>> I noticed from Mark's last presentation that the taverna workflow 
>> shown
>> there seems to have two input objects (blue triangles) - presumably a
>> namespace and an ID that are going into a create_moby_data 'box'. Im
>> wondering if there is more to using MOBY via Taverna than a simple 
>> text
>> input object and that is my problem, or if its a more fundamental
>> service problem.
>>
>> I would love to get things working with Taverna so any thoughts would
>> be most appreciated!
>>
>> Cheers,
>>
>>        Simon.
>>
>> --
>>
>> Simon N. Twigger, Ph.D.
>> Assistant Professor, Department of Physiology
>> Medical College of Wisconsin
>> 8701 Watertown Plank Road,
>> Milwaukee, WI, USA
>> tel: 414-456-8802
>> fax: 414-456-6595
>> AIM/iChat: simontatmcw
>>
>> _______________________________________________
>> moby-l mailing list
>> moby-l at biomoby.org
>> http://biomoby.org/mailman/listinfo/moby-l
>>
>>
>
>
--

Simon N. Twigger, Ph.D.
Assistant Professor, Department of Physiology
Medical College of Wisconsin
8701 Watertown Plank Road,
Milwaukee, WI, USA
tel: 414-456-8802
fax: 414-456-6595
AIM/iChat: simontatmcw