[MOBY-l] Taverna & MOBY services

[Michael Jensen]

Did you try the Dragon DB Annotated Images example workflow that comes
with the Taverna examples? That one works well and can be used to help
you figure out others.

-Michael


On Thu, 20 Jan 2005 16:30:51 -0600, Twigger Simon <simont at mcw.edu> wrote:
> Hi there,
> 
> Im trying to get a quick MOBY service up and running using Taverna and
> its not working quite as I would like.
> 
> I deregistered my old keywordToGene service, moved it to a new machine,
> updated the MOBY code to 0.8 and reregistered the service. Ive checked
> it out using the gbrowse client and it seems to behave appropriately.
> Querying with a global_keyword seed text of A2m brings back the correct
> information. However, if I set something up in Taverna to send the same
> text to the service it always fails, the stack trace in the terminal
> seems to indicate a perl problem with an error thrown by XML::Parser
> 
> I noticed from Mark's last presentation that the taverna workflow shown
> there seems to have two input objects (blue triangles) - presumably a
> namespace and an ID that are going into a create_moby_data 'box'. Im
> wondering if there is more to using MOBY via Taverna than a simple text
> input object and that is my problem, or if its a more fundamental
> service problem.
> 
> I would love to get things working with Taverna so any thoughts would
> be most appreciated!
> 
> Cheers,
> 
>        Simon.
> 
> --
> 
> Simon N. Twigger, Ph.D.
> Assistant Professor, Department of Physiology
> Medical College of Wisconsin
> 8701 Watertown Plank Road,
> Milwaukee, WI, USA
> tel: 414-456-8802
> fax: 414-456-6595
> AIM/iChat: simontatmcw
> 
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