[MOBY-l] Problem invoking services

Fri Oct 10 19:13:56 EDT 2003

Ken Steube wrote:
> Hi Jay,
> 
> Are you calling the service directly with SOAP calls?  Not sure I
> understood your question.  You can do that but MOBY provides a
> higher-level method execute() to call services.  Go to biomoby.org and
> look in the API for this method. I have an example program for calling a
> service if you want it.
> 
> Ken

You can find some working examples in this tutorial:
http://www.pasteur.fr/~letondal/biomoby/tutorial.html

> 
> On Fri, 10 Oct 2003, Jay Potts wrote:
> 
> > Hello Moby folks,
> > I'm trying to invoke a service that I've found through Moby's registry, and
> > have run into the following problems.
> >
> > I'm not sure what to set as the endpoint, for the SOAP message that I'm
> > sending. I've tried setting the endpoint to
> > http://www.biomoby.org/#GetPubmed, but it gives me an error "(405) Method
> > not allowed"
> >
> > So, I tried sending it to
> > http://prometheus.brc.mcw.edu/pubfetch-bin/PubFetchService.pl, but then the
> > resulting message is just the following fault:
> > "Denied access to method (GetPubmed) in class (main) at
> > /usr/local/lib/perl5/site_perl/5.8.0/SOAP/Lite.pm line 2128"
> >
> > Does anyone have any idea of what I'm doing wrong? I'm pretty new to this
> > SOAP RPC stuff, so I'm sure it could be a great variety of things. I can
> > provide more info, if necessary.
> >
> >
> > Currently, the message is as follows:
> > <?xml version="1.0" encoding="UTF-8"?>
> >
> > <SOAP-ENV:Envelope
> > xmlns:xsi="http://www.w3.org/1999/XMLSchema-instance"
> > xmlns:SOAPENC="http://schemas.xmlsoap.org/soap/encoding/"
> > xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"
> > xmlns:xsd="http://www.w3.org/1999/XMLSchema"
> > SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/">
> >
> > <SOAP-ENV:Body>
> > <namesp3:GetPubmed xmlns:namesp3="http://biomoby.org/">
> > <body>
> >
> > <![CDATA[<?xml version='1.0' encoding='UTF-8'?>
> >
> > <moby:MOBY xmlns:moby='http://www.biomoby.org/moby-s'>
> >
> > <moby:Query>
> >
> > <moby:queryInput moby:articleName='ccc'>
> > <moby:Simple>
> > <Object namespace="Global_Keyword" id="1234568" >
> > </moby:Simple>
> > </moby:queryInput>
> >
> > <moby:queryInput moby:articleName='ccc'>
> > <moby:Simple>
> > <Object namespace="Global_Keyword" id="1234567" >
> > </moby:Simple>
> > </moby:queryInput>
> >
> > </moby:Query>
> >
> > </moby:MOBY>]]>
> >
> > </body>
> >
> > </namesp3:GetPubmed>
> > </SOAP-ENV:Body>
> > </SOAP-ENV:Envelope>
> >
> >
> >
> > _______________________________________________
> > moby-l mailing list
> > moby-l at biomoby.org
> > http://biomoby.org/mailman/listinfo/moby-l
> >
> 
> -- 
> -------------------------------------
> Ken Steube            steube at sdsc.edu
> San Diego Supercomputer Center @ UCSD
> San Diego, California             USA
> 
> _______________________________________________
> moby-l mailing list
> moby-l at biomoby.org
> http://biomoby.org/mailman/listinfo/moby-l

--
Catherine Letondal -- Pasteur Institute Computing Center