[MOBY-guts] biomoby commit

[Eddie Kawas]

kawas
Fri May  9 16:51:36 EDT 2008
Update of /home/repository/moby/moby-live/Perl/MOSES-MOBY/lib/MOSES
In directory dev.open-bio.org:/tmp/cvs-serv19726/Perl/MOSES-MOBY/lib/MOSES

Modified Files:
	MOBY.pm 
Log Message:
added some more brief documentation. more to come
moby-live/Perl/MOSES-MOBY/lib/MOSES MOBY.pm,1.3,1.4
===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOSES-MOBY/lib/MOSES/MOBY.pm,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Perl/MOSES-MOBY/lib/MOSES/MOBY.pm	2008/02/21 00:12:56	1.3
+++ /home/repository/moby/moby-live/Perl/MOSES-MOBY/lib/MOSES/MOBY.pm	2008/05/09 20:51:36	1.4
@@ -7,7 +7,7 @@
 
 use vars qw{$VERSION @ISA @EXPORT @EXPORT_OK};
 BEGIN {
-	$VERSION = '0.84';
+	$VERSION = sprintf "%d.%02d", q$Revision$ =~ /: (\d+)\.(\d+)/;
 	@ISA       = qw{ Exporter };
 	@EXPORT    = qw{};
 	@EXPORT_OK = qw{};
@@ -318,6 +318,9 @@
 =item *
     FindBin
 
+=item *
+    IO::Prompt - try to install version 0.99.2 and not 0.99.4
+
 =back
 
 =cut
@@ -786,9 +789,11 @@
 
 You can use option I<-s> to get the generated result directly on the screen (in that case no file is created).
 
-You can use the option B<-u> updates the datatype cache.
+You can use the option B<-u> to update the datatype cache.
+
+You can use the option B<-f> to fill the datatype cache.
 
-You can use the option B<-f> fills the datatype cache.
+The B<-R> option allows you to specify a registry endpoint. For instance, -R http://moby.ucalgary.ca/moby/MOBY-Central.pl would cause the script to use UCalgary registry.
 
 The BioMoby primitive types (String, Integer, Float, Boolean and DateTime) are never generated. They were created manually.
 
@@ -873,6 +878,10 @@
    rather than load the base" enabled.<p/>
    Option <strong>-u</strong> updates the service cache.<p/>
    Option <strong>-f</strong> fills the service cache.<p/>
+   Option <strong>-R</strong> allows you to specify a registry endpoint.
+       For instance, 
+             <em>-R http://moby.ucalgary.ca/moby/MOBY-Central.pl</em>
+       would cause the script to use UCalgary registry.
 </pre>
 
 =end html
@@ -1903,7 +1912,7 @@
   <em>ScriptAlias /cgi-bin/</em></li>
   <li>Underneath this text, enter something like the following (replace Eddie with your username):<br /> 
   <em>ScriptAlias /services/ &quot;C:/Documents and Settings/Eddie/Perl-MoSeS/&quot;</em></li>
-  <li> Just below this, after the <em>&lt;/IfModule&gt;</em> line, add the following text (replace Eddie with your username):
+  <li> Just below this, after the <em>&lt;/IfModule&gt;</em> line, add the following text (replace Eddie with your username and the directory with your directory):
     <pre>
       &lt;Directory &quot;C:/Documents and Settings/Eddie/Perl-MoSeS&quot;&gt;
          AllowOverride None
@@ -1949,7 +1958,7 @@
 
 It is B<highly recommended> that you change the name of the file if you anticipate other users B<copying their files> to the cgi-bin directory as well!
 
-Once the file has been copied, then change the ownership of the file to the web servers' user/group.
+Once the file has been copied, change the ownership of the file to the web servers' user/group. Also, make sure that the path (and its parents) to all of the directories in the 'use lib ...' are readable by your web server. 
 
 That's all there is to it! Now when you test your services, remember that your file may no longer be called MobyServer.cgi, but something else that you named it!
 
@@ -1997,21 +2006,26 @@
 
 =cut
 
-=head2 EXPORT
+=head1 EXPORT
 
 None by default.
 
 
 =head1 SEE ALSO
 
-For the most up-to-date documentation, visit the Perl MoSes online documentation:
+=head2 Tutorials on building services
+
+For some tutorials on using Perl MoSeS:
 
 =begin html
 
-	<a href='http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/PerlMoses.html' target='_blank'>Perl MoSeS - Online</a>
+	<a href='http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Docs/MOBY-S_API/Perl/construct_moses_soap_service.html' target='_blank'>Tutorial for creating SOAP based Biomoby Services</a><br/>
+	<a href='http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Docs/MOBY-S_API/Perl/construct_moses_cgi_service.html' target='_blank'>Tutorial for creating CGI based Biomoby Services</a>
 
 =end html
 
+=cut
+
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