[MOBY-guts] biomoby commit

[Paul Gordon]

gordonp
Thu Feb  8 11:59:58 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/service
In directory dev.open-bio.org:/tmp/cvs-serv27169/main/org/biomoby/service

Modified Files:
	Asynchronous.java MobyServlet.java mobyService.java 
Log Message:
Documentation updates
moby-live/Java/src/main/org/biomoby/service Asynchronous.java,1.1,1.2 MobyServlet.java,1.4,1.5 mobyService.java,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/Asynchronous.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/Asynchronous.java	2006/12/06 16:07:10	1.1
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/Asynchronous.java	2007/02/08 16:59:58	1.2
@@ -1,3 +1,5 @@
+package org.biomoby.service;
+
 /**
  * This interface is used by MobyServlet to determine if the processRequest()
  * method should be spawned in a separate thread.  Any subclass of MobyServlet
@@ -5,6 +7,4 @@
  * the maximum number of threads allowed is the number of processors on the machine.
  */
 
-package org.biomoby.service;
-
 public interface Asynchronous{}

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/MobyServlet.java,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/MobyServlet.java	2006/12/07 16:37:36	1.4
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/MobyServlet.java	2007/02/08 16:59:58	1.5
@@ -1,12 +1,5 @@
-package org.biomoby.service;
-
-/**
- * This the base implementation of a MOBY servlet that can be 
- * easily extended to provide a meaningful service (by overriding
- * processRequest()).  Please see
- * the documentation on <a href="http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/deployingServices.html">how to use this servlet</a>.
- */
 
+package org.biomoby.service;
 import org.biomoby.service.test.TestServletConfig;
 import org.biomoby.service.test.TestServletContext;
 
@@ -33,6 +26,13 @@
 import java.util.Vector;
 import java.math.*;
 
+/**
+ * This the base implementation of a MOBY servlet that can be 
+ * easily extended to provide a meaningful service (by overriding
+ * processRequest()).  Please see
+ * the documentation on <a href="http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/deployingServices.html">how to use this servlet</a>.
+ */
+
 @mobyService(name="MobyServlet",
 	     type="Testing", 
 	     provider="moby.ucalgary.ca", 
@@ -1112,7 +1112,7 @@
      * To add any other type of non-fatal error (e.g. a WARN), call addException() explicitly,
      * rather than throwing a Java Exception which stops the job's execution.
      *
-     * @param request the request to process, with params guaranteed to be of the type specified in WEB-INF/web.xml
+     * @param request the request to process, with params guaranteed to be of the type specified in the mobyService annotation, or values overriding the annjotation in a WAR file's WEB-INF/web.xml
      */
     public void processRequest(MobyDataJob request, MobyDataJob result) throws Exception{
     }

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/mobyService.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/mobyService.java	2006/12/04 22:33:50	1.1
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/mobyService.java	2007/02/08 16:59:58	1.2
@@ -1,13 +1,14 @@
 package org.biomoby.service;
 
+import java.lang.annotation.*;
+
 /**
  * Indicates that the annotated class is a MOBY Semantic Web Service,
  * and provides the information that will populate the MOBY Central
- * registry for this service instance.
+ * registry for this service instance.  For information on how to use this
+ * interface, please see <a href="http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/deployingServices.html">the MobyServlet HOW-TO</a>.
  */
 
-import java.lang.annotation.*;
-
 @Retention(RetentionPolicy.RUNTIME)
 @Target(ElementType.TYPE)
 @Documented